PlantPromoterDB promoter information of AK068807
Summary of Gene (AK068807)
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Overview
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Focused view (chromosome 7: 30052760-30053959)
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Genome position
from initiation codon AK101012 J013001D13 J013022D09 J013028C24 J013032M14 J013097J18 J013104C10 J013131J23 J013159G14 J023097E13 J023106G01 J023123J16 J023148P17 J053066A04 J065095A22 J090010D23 TSS from cDNA TSS information AK068807 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of AK068807
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | G | clone | + | 30052886 | -174 |
| TSS clone peak | G | clone | + | 30052966 | -94 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CCCCTCCTCCTCCTCT | + | 30052974 | 30052989 | -86 | -71 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GCGCGGGT | + | 30052609 | 30052616 | -451 | -444 | |||
| OsREG439 | GCGCGGGT | PPDB Motif | PLACE Motif | ||||||
| REG | GACGCGAC | + | 30052676 | 30052683 | -384 | -377 | |||
| OsREG583 | GACGCGAC | PPDB Motif | PLACE Motif | ||||||
| REG | GCCCGGCC | + | 30052796 | 30052803 | -264 | -257 | |||
| OsREG614 | GCCCGGCC | PPDB Motif | PLACE Motif | ||||||
| REG | CACCGCAC | + | 30052824 | 30052831 | -236 | -229 | |||
| OsREG500 | CACCGCAC | PPDB Motif | PLACE Motif | ||||||
| REG | GCCCACCAC | + | 30052899 | 30052907 | -161 | -153 | |||
| OsREG599 | GCCCACCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG527 | CCCACCAC | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||