Summary of Gene (AK070518)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AK070518 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | T | clone | - | 31795864 | -889 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CTCTCCCCTCT | - | 31795818 | 31795828 | -843 | -853 |
Y Patch | TCCCCTCTCCTCC | - | 31795867 | 31795879 | -892 | -904 |
Y Patch | CCTCCCCT | - | 31795899 | 31795906 | -924 | -931 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TTTCGGCC | - | 31795923 | 31795930 | -948 | -955 | |||
OsREG634 | TTTCGGCC | PPDB Motif |   | PLACE Motif |   | ||||
REG | GACCGTTG | - | 31795966 | 31795973 | -991 | -998 | |||
OsREG495 | GACCGTTG | PPDB Motif | CCAACGG  | PLACE Motif |   | ||||
REG | GATCCGACGGCCCAGAT | - | 31795979 | 31795995 | -1004 | -1020 | |||
OsREG588 | GATCCGAC | PPDB Motif | CCGAC  | PLACE Motif |   | ||||
OsREG483 | ATCCGACG | PPDB Motif | CCGAC  | PLACE Motif | CGACG  | ||||
OsREG546 | TCCGACGG | PPDB Motif | CCGAC  | PLACE Motif | CGACG  | ||||
OsREG584 | GACGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG445 | ACGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | AACAAAC  | ||||
OsREG565 | CGGCCCAG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG629 | GGCCCAGA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG486 | GCCCAGAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GGGCCTTG | - | 31796050 | 31796057 | -1075 | -1082 | |||
OsREG497 | GGGCCTTG | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |