PlantPromoterDB promoter information of AK071189
Summary of Gene (AK071189)
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Overview
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Focused view (chromosome 2: 16889622-16888423)
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Genome position
from initiation codon TSS from cDNA TSS information AK071189 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Promoter Summary of AK071189
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | None | None | None | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone peak | C | clone | - | 16889195 | AK065460, AK065460 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | GTGGTGGGCGAGG | - | 16889295 | 16889307 | AK065460 | ||||
| OsREG527 | GTGGTGGG | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG599 | TGGTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG549 | GGGCGAGG | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | CCAGGCCCCAG | - | 16889335 | 16889345 | AK065460 | ||||
| OsREG524 | CCAGGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG580 | GGCCCCAG | PPDB Motif | PLACE Motif | ||||||
| REG | GCCCACGA | - | 16889432 | 16889439 | AK065460 | ||||
| OsREG601 | GCCCACGA | PPDB Motif | GCCCA | PLACE Motif | |||||