Summary of Gene (AK071296)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon 009-132-C12 014-091-G03 AB072977 AK099375 AK104970 J065007I09 J065081H07 J065122B18 J065181G15 J065182J07 J065197D23 J065197G08 J065201H20 J090034E11 J100077M04 TSS from cDNA TSS information AK071296 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | - | 1240037 | -80 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TCCGGCCCACT | - | 1240082 | 1240092 | -125 | -135 | |||
OsREG644 | TCCGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG542 | CCGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG564 | CGGCCCAC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG478 | GGCCCACT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TAATGGGCCGC | - | 1240121 | 1240131 | -164 | -174 | |||
OsREG610 | TAATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG431 | AATGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG490 | ATGGGCCG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG618 | TGGGCCGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | CCACGGCCCAAAT | - | 1240151 | 1240163 | -194 | -206 | |||
OsREG521 | CCACGGCC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG504 | CACGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG445 | ACGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | AACAAAC  | ||||
OsREG563 | CGGCCCAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG625 | GGCCCAAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG493 | GCCCAAAT | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |