PlantPromoterDB promoter information of AK073657
Summary of Gene (AK073657)
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Overview
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Focused view (chromosome 7: 22468927-22467728)
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Genome position
from initiation codon TSS from cDNA TSS information AK073657 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Promoter Summary of AK073657
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | - | 22465437 | -110 |
| TSS clone peak | G | clone | - | 22465367 | -40 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TCGTGGGCT | - | 22465422 | 22465430 | -95 | -103 | |||
| OsREG601 | TCGTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG463 | CGTGGGCT | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | TCAGCCCATT | - | 22465466 | 22465475 | -139 | -148 | |||
| OsREG657 | TCAGCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG491 | CAGCCCAT | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG432 | AGCCCATT | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | AGCCCAAAC | - | 22465486 | 22465494 | -159 | -167 | |||
| OsREG457 | AGCCCAAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG593 | GCCCAAAC | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||