Summary of Gene (AK073875)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon AK066869 J023063M16 J033074B12 J033076K24 J033112L13 TSS from cDNA TSS information AK073875 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | G | clone | + | 21912313 | -122 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CCTCCTCTCTCTCTCTCTCCCC | + | 21912264 | 21912285 | -171 | -150 |
Y Patch | CTCTCCCC | + | 21912348 | 21912355 | -87 | -80 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GGCCGTCCGATC | + | 21912122 | 21912133 | -313 | -302 | |||
OsREG624 | GGCCGTCC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG562 | GCCGTCCG | PPDB Motif |   | PLACE Motif |   | ||||
OsREG545 | CCGTCCGA | PPDB Motif |   | PLACE Motif |   | ||||
OsREG484 | CGTCCGAT | PPDB Motif |   | PLACE Motif |   | ||||
OsREG589 | GTCCGATC | PPDB Motif |   | PLACE Motif |   | ||||
REG | ATCCAACGGCC | + | 21912151 | 21912161 | -284 | -274 | |||
OsREG481 | ATCCAACG | PPDB Motif | CCAACGG  | PLACE Motif |   | ||||
OsREG548 | TCCAACGG | PPDB Motif | CCAACGG  | PLACE Motif |   | ||||
OsREG518 | CCAACGGC | PPDB Motif | CCAACGG  | PLACE Motif |   | ||||
OsREG494 | CAACGGCC | PPDB Motif | CCAACGG  | PLACE Motif |   | ||||
REG | CATCCACC | + | 21912173 | 21912180 | -262 | -255 | |||
OsREG515 | CATCCACC | PPDB Motif |   | PLACE Motif |   | ||||
REG | GCCCACCC | + | 21912185 | 21912192 | -250 | -243 | |||
OsREG600 | GCCCACCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | CACTGACACGTGGGCCCCACGCCTC | + | 21912243 | 21912267 | -192 | -168 | |||
OsREG510 | CACTGACA | PPDB Motif |   | PLACE Motif | TGAC  | ||||
OsREG509 | GACACGTG | PPDB Motif | ACGT  | PLACE Motif | ACGTGKC  | ||||
OsREG434 | ACACGTGG | PPDB Motif | ACGT  | PLACE Motif |   | ||||
OsREG508 | CACGTGGG | PPDB Motif | ACGT  | PLACE Motif |   | ||||
OsREG449 | ACGTGGGC | PPDB Motif | GCCCA, ACGT  | PLACE Motif | ACGTSSSC  | ||||
OsREG571 | CGTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG640 | GTGGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG647 | TGGGCCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG641 | GGGCCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG631 | GGCCCCAC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG572 | GCCCCACG | PPDB Motif |   | PLACE Motif |   | ||||
OsREG503 | CACGCCTC | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |