Summary of Gene (AK099088)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon 013-016-H01 AF072849 AK062107 J013038I16 J013038L17 J013038N18 J013038O18 J013124A09 J023007N04 J033023C02 J033030M18 J033051A13 J033068I09 J033100E04 J065153E19 J065207I02 J075007A07 J075036M04 J075147I03 J075197L11 TSS from cDNA TSS information AK099088 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | G | clone | + | 33793020 | -119 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CCCCTCCTCTT | + | 33793046 | 33793056 | -93 | -83 |
Y Patch | TCTTCCCC | + | 33793058 | 33793065 | -81 | -74 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | AACTGGGC | + | 33792887 | 33792894 | -252 | -245 | |||
OsREG425 | AACTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | CAAGTGGGCCAA | + | 33792935 | 33792946 | -204 | -193 | |||
OsREG498 | CAAGTGGG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG478 | AGTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG654 | GTGGGCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG660 | TGGGCCAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | AATTGGGCCGTCC | + | 33792957 | 33792969 | -182 | -170 | |||
OsREG433 | AATTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG492 | ATTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG563 | TTGGGCCG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG445 | TGGGCCGT | PPDB Motif | GCCCA  | PLACE Motif | AACAAAC  | ||||
OsREG584 | GGGCCGTC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG624 | GGCCGTCC | PPDB Motif |   | PLACE Motif |   | ||||
REG | CCCGGCCC | + | 33792972 | 33792979 | -167 | -160 | |||
OsREG538 | CCCGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |