PlantPromoterDB promoter information of AK099301
Summary of Gene (AK099301)
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Overview
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Focused view (chromosome 1: 41311023-41309824)
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Genome position
from initiation codon AK120875 AY224580 TSS from cDNA TSS information AK099301 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Promoter Summary of AK099301
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | G | clone | - | 41306679 | -106 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTCTTTCTCCCCCTTCC | - | 41306657 | 41306674 | -84 | -101 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TCAGCCCA | - | 41306719 | 41306726 | -146 | -153 | |||
| OsREG657 | TCAGCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | TCTCGGCCCG | - | 41306728 | 41306737 | -155 | -164 | |||
| OsREG635 | TCTCGGCC | PPDB Motif | PLACE Motif | ||||||
| OsREG575 | CTCGGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG568 | TCGGCCCG | PPDB Motif | ACGGGC | PLACE Motif | |||||
| REG | GAGGCCCATTT | - | 41306757 | 41306767 | -184 | -194 | |||
| OsREG587 | GAGGCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG474 | AGGCCCAT | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG431 | GGCCCATT | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG422 | GCCCATTT | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | GGTCCCACC | - | 41306775 | 41306783 | -202 | -210 | |||
| OsREG650 | GGTCCCAC | PPDB Motif | GGGACCC | PLACE Motif | |||||
| OsREG651 | GTCCCACC | PPDB Motif | GGGACCC | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||