Summary of Gene (AK100570)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AK100570 5'->3' (+) Promoter sequence AK069843
J023034H09 J033090D08 J100025N07 J100075G18 TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | G | clone | + | 1882715 | -129 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | CGACTATA | + | 1882674 | 1882681 | -170 | -163 |
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CGGCTCGG | + | 1882445 | 1882452 | -399 | -392 | |||
OsREG540 | CGGCTCGG | PPDB Motif |   | PLACE Motif |   | ||||
REG | GGTGGGCCCCAG | + | 1882511 | 1882522 | -333 | -322 | |||
OsREG628 | GGTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG640 | GTGGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG647 | TGGGCCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG641 | GGGCCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG580 | GGCCCCAG | PPDB Motif |   | PLACE Motif |   | ||||
REG | CCCCCACGTGTC | + | 1882535 | 1882546 | -309 | -298 | |||
OsREG536 | CCCCCACG | PPDB Motif |   | PLACE Motif |   | ||||
OsREG450 | CCCCACGT | PPDB Motif | ACGT  | PLACE Motif |   | ||||
OsREG508 | CCCACGTG | PPDB Motif | ACGT  | PLACE Motif |   | ||||
OsREG434 | CCACGTGT | PPDB Motif | ACGT  | PLACE Motif |   | ||||
OsREG509 | CACGTGTC | PPDB Motif | ACGT  | PLACE Motif | ACGTGKC  | ||||
REG | CCCCACGTGTC | + | 1882557 | 1882567 | -287 | -277 | |||
OsREG450 | CCCCACGT | PPDB Motif | ACGT  | PLACE Motif |   | ||||
OsREG508 | CCCACGTG | PPDB Motif | ACGT  | PLACE Motif |   | ||||
OsREG434 | CCACGTGT | PPDB Motif | ACGT  | PLACE Motif |   | ||||
OsREG509 | CACGTGTC | PPDB Motif | ACGT  | PLACE Motif | ACGTGKC  | ||||
REG | TGTGGGCCTAACTGGGCCGGC | + | 1882594 | 1882614 | -250 | -230 | |||
OsREG627 | TGTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG472 | GTGGGCCT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG656 | TGGGCCTA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG425 | AACTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG454 | ACTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG565 | CTGGGCCG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG542 | TGGGCCGG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG615 | GGGCCGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | ACATGGGCTGAATTGGGCCGCA | + | 1882620 | 1882641 | -224 | -203 | |||
OsREG437 | ACATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG467 | CATGGGCT | PPDB Motif | GCCCA, CCATGG  | PLACE Motif |   | ||||
OsREG491 | ATGGGCTG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG657 | TGGGCTGA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG433 | AATTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG492 | ATTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG563 | TTGGGCCG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG618 | TGGGCCGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG643 | GGGCCGCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | CTTGGGCCTC | + | 1882656 | 1882665 | -188 | -179 | |||
OsREG581 | CTTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG471 | TTGGGCCT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG587 | TGGGCCTC | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone peak | G | clone | - | 1882475 | AK069843, J100025N07, J100075G18, AK069843, J023034H09, J033090D08 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | CTGGGGCC | - | 1882515 | 1882522 | AK069843, J023034H09, J033090D08, J100025N07, J100075G18 | ||||
OsREG580 | CTGGGGCC | PPDB Motif |   | PLACE Motif |   | ||||
REG | GACACGTGGGGG | - | 1882535 | 1882546 | AK069843, J023034H09, J033090D08, J100025N07, J100075G18 | ||||
OsREG509 | GACACGTG | PPDB Motif | ACGT  | PLACE Motif | ACGTGKC  | ||||
OsREG434 | ACACGTGG | PPDB Motif | ACGT  | PLACE Motif |   | ||||
OsREG508 | CACGTGGG | PPDB Motif | ACGT  | PLACE Motif |   | ||||
OsREG450 | ACGTGGGG | PPDB Motif | ACGT  | PLACE Motif |   | ||||
OsREG536 | CGTGGGGG | PPDB Motif |   | PLACE Motif |   | ||||
REG | GACACGTGGGG | - | 1882557 | 1882567 | AK069843, J023034H09, J033090D08, J100025N07, J100075G18 | ||||
OsREG509 | GACACGTG | PPDB Motif | ACGT  | PLACE Motif | ACGTGKC  | ||||
OsREG434 | ACACGTGG | PPDB Motif | ACGT  | PLACE Motif |   | ||||
OsREG508 | CACGTGGG | PPDB Motif | ACGT  | PLACE Motif |   | ||||
OsREG450 | ACGTGGGG | PPDB Motif | ACGT  | PLACE Motif |   | ||||
REG | GCCGGCCCAGTTAGGCCCACA | - | 1882594 | 1882614 | AK069843, J023034H09, J033090D08, J100025N07, J100075G18 | ||||
OsREG615 | GCCGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG542 | CCGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG565 | CGGCCCAG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG454 | GGCCCAGT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG425 | GCCCAGTT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG656 | TAGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG472 | AGGCCCAC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG627 | GGCCCACA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TGCGGCCCAATTCAGCCCATGT | - | 1882620 | 1882641 | AK069843, J023034H09, J033090D08, J100025N07, J100075G18 | ||||
OsREG643 | TGCGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG618 | GCGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG563 | CGGCCCAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG492 | GGCCCAAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG433 | GCCCAATT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG657 | TCAGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG491 | CAGCCCAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG467 | AGCCCATG | PPDB Motif | GCCCA, CCATGG  | PLACE Motif |   | ||||
OsREG437 | GCCCATGT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GAGGCCCAAG | - | 1882656 | 1882665 | AK069843, J023034H09, J033090D08, J100025N07, J100075G18 | ||||
OsREG587 | GAGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG471 | AGGCCCAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG581 | GGCCCAAG | PPDB Motif | GCCCA  | PLACE Motif |   |