Summary of Gene (AK100656)
|
Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon J013157D14 J023086B04 J033115L20 J033140O12 J033149J11 J065112C14 J065195L18 J090070D10 TSS from cDNA TSS information AK100656 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
|
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | - | 1774717 | -153 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TTCTCCTCCCTC | - | 1774720 | 1774731 | -156 | -167 |
Y Patch | CCTCCTCTTCCCCCCCTCCT | - | 1774734 | 1774753 | -170 | -189 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CTCTCCGC | - | 1774771 | 1774778 | -207 | -214 | |||
OsREG576 | CTCTCCGC | PPDB Motif |   | PLACE Motif |   | ||||
REG | CCGTGGGCCCCCAC | - | 1774836 | 1774849 | -272 | -285 | |||
OsREG547 | CCGTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG571 | CGTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG640 | GTGGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG647 | TGGGCCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG613 | GCCCCCAC | PPDB Motif |   | PLACE Motif |   | ||||
REG | GGTCCACGTGGGGGCCCACCC | - | 1774879 | 1774899 | -315 | -335 | |||
OsREG570 | GGTCCACG | PPDB Motif |   | PLACE Motif |   | ||||
OsREG508 | CACGTGGG | PPDB Motif | ACGT  | PLACE Motif |   | ||||
OsREG450 | ACGTGGGG | PPDB Motif | ACGT  | PLACE Motif |   | ||||
OsREG536 | CGTGGGGG | PPDB Motif |   | PLACE Motif |   | ||||
OsREG613 | GTGGGGGC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG647 | GGGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG640 | GGGCCCAC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG628 | GGCCCACC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG600 | GCCCACCC | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |