Summary of Gene (AK100759)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon 009-108-G05 011-041-G01 AK058211 AK062804 J023119B10 J065039L02 J065043O03 J065070M16 J065152D11 J065164G06 J075045M08 J075047H08 J075114I07 J075179C23 J090032P04 J090068D01 J100044L07 J100078I02 TSS from cDNA TSS information AK100759 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | + | 21619191 | -22 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | ACAGCCCAATT | + | 21618929 | 21618939 | -284 | -274 | |||
OsREG435 | ACAGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG511 | CAGCCCAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG460 | AGCCCAAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG433 | GCCCAATT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TGGTGGGCCCT | + | 21619051 | 21619061 | -162 | -152 | |||
OsREG599 | TGGTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG628 | GGTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG640 | GTGGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG475 | TGGGCCCT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GCGGGCCCACA | + | 21619104 | 21619114 | -109 | -99 | |||
OsREG619 | GCGGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG566 | CGGGCCCA | PPDB Motif | GCCCA, ACGGGC  | PLACE Motif |   | ||||
OsREG640 | GGGCCCAC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG627 | GGCCCACA | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |