Summary of Gene (AK102651)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon 012-025-F12 012-045-B09 012-047-E09 012-074-E08 015-062-A09 TSS from cDNA TSS information AK102651 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | G | clone | + | 5143771 | -70 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TGCCTATA | + | 5143733 | 5143740 | -108 | -101 |
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CACACACC | + | 5143528 | 5143535 | -313 | -306 | |||
OsREG499 | CACACACC | PPDB Motif |   | PLACE Motif |   | ||||
REG | GCCACGTC | + | 5143662 | 5143669 | -179 | -172 | |||
OsREG585 | GCCACGTC | PPDB Motif | ACGT  | PLACE Motif | ACGTGKC  | ||||
REG | CACGCCACGCCACCCCCACGTCGCGCGC | + | 5143690 | 5143717 | -151 | -124 | |||
OsREG502 | CACGCCACGCCAC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG536 | CCCCCACG | PPDB Motif |   | PLACE Motif |   | ||||
OsREG450 | CCCCACGT | PPDB Motif | ACGT  | PLACE Motif |   | ||||
OsREG557 | GTCGCGCG | PPDB Motif | ACGCGC  | PLACE Motif |   | ||||
OsREG617 | TCGCGCGC | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |