PlantPromoterDB promoter information of AK102829
Summary of Gene (AK102829)
|
Overview
|
Focused view (chromosome 5: 173697-172498)
|
Genome position
from initiation codon TSS from cDNA TSS information AK102829 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
|
|
|
Promoter Summary of AK102829
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | G | clone | - | 175295 | -748 |
| TSS clone peak | G | clone | - | 175291 | -744 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AAAAGCCCAATA | - | 175333 | 175344 | -786 | -797 | |||
| OsREG419 | AAAAGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG421 | AAAGCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG426 | AAGCCCAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG460 | AGCCCAAT | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG596 | GCCCAATA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | ATGGCCCAAA | - | 175351 | 175360 | -804 | -813 | |||
| OsREG487 | ATGGCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG659 | TGGCCCAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG625 | GGCCCAAA | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||