Summary of Gene (AK103487)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AK103487 5'->3' (-) Promoter sequence AB080262
TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | G | clone | - | 25785082 | -192 |
TSS clone peak | G | clone | - | 25784978 | -88 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CCCCCTCCTCTT | - | 25784992 | 25785003 | -102 | -113 |
Y Patch | TCCCTCTC | - | 25785051 | 25785058 | -161 | -168 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CAGGTGGGTCCC | - | 25785083 | 25785094 | -193 | -204 | |||
OsREG514 | CAGGTGGG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG622 | GTGGGTCC | PPDB Motif | GGGACCC  | PLACE Motif |   | ||||
OsREG637 | TGGGTCCC | PPDB Motif | GGGACCC  | PLACE Motif |   | ||||
REG | CCATGGGCCTC | - | 25785133 | 25785143 | -243 | -253 | |||
OsREG525 | CCATGGGC | PPDB Motif | GCCCA, CCATGG  | PLACE Motif |   | ||||
OsREG517 | CATGGGCC | PPDB Motif | GCCCA, CCATGG  | PLACE Motif |   | ||||
OsREG474 | ATGGGCCT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG587 | TGGGCCTC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | ACACGTGGGCCCGCA | - | 25785151 | 25785165 | -261 | -275 | |||
OsREG434 | ACACGTGG | PPDB Motif | ACGT  | PLACE Motif |   | ||||
OsREG508 | CACGTGGG | PPDB Motif | ACGT  | PLACE Motif |   | ||||
OsREG449 | ACGTGGGC | PPDB Motif | GCCCA, ACGT  | PLACE Motif | ACGTSSSC  | ||||
OsREG571 | CGTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG640 | GTGGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG566 | TGGGCCCG | PPDB Motif | GCCCA, ACGGGC  | PLACE Motif |   | ||||
OsREG619 | GGGCCCGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG632 | GGCCCGCA | PPDB Motif |   | PLACE Motif |   | ||||
REG | ATTTGGGCCTT | - | 25785175 | 25785185 | -285 | -295 | |||
OsREG493 | ATTTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG625 | TTTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG471 | TTGGGCCT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG430 | TGGGCCTT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TGGGGCCCACT | - | 25785302 | 25785312 | -412 | -422 | |||
OsREG641 | TGGGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG647 | GGGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG640 | GGGCCCAC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG478 | GGCCCACT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | AACGGCCCG | - | 25785371 | 25785379 | -481 | -489 | |||
OsREG423 | AACGGCCC | PPDB Motif | GCCCA, AAACG(C/G)  | PLACE Motif |   | ||||
OsREG446 | ACGGCCCG | PPDB Motif | ACGGGC  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |