PlantPromoterDB promoter information of AK103570
Summary of Gene (AK103570)
|
Overview
|
Focused view (chromosome 1: 34054231-34055430)
|
Genome position
from initiation codon AK061986 J013073E16 J013134M05 J023020K13 J033132M15 J065184B06 J100037C20 Os01g0766501 TSS from cDNA TSS information AK103570 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
|
|
|
Promoter Summary of AK103570
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | G | clone | + | 34054739 | -92 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GCCGGCCC | + | 34054441 | 34054448 | -390 | -383 | |||
| OsREG615 | GCCGGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | ATCCAACGG | + | 34054475 | 34054483 | -356 | -348 | |||
| OsREG481 | ATCCAACG | PPDB Motif | CCAACGG | PLACE Motif | |||||
| OsREG548 | TCCAACGG | PPDB Motif | CCAACGG | PLACE Motif | |||||
| REG | GTCCCACCAC | + | 34054505 | 34054514 | -326 | -317 | |||
| OsREG651 | GTCCCACC | PPDB Motif | GGGACCC | PLACE Motif | |||||
| OsREG527 | CCCACCAC | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | CCCACCTGT | + | 34054645 | 34054653 | -186 | -178 | |||
| OsREG514 | CCCACCTG | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG436 | CCACCTGT | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||