PlantPromoterDB promoter information of AK104418
Summary of Gene (AK104418)
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Overview
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Focused view (chromosome 3: 29392574-29393773)
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Genome position
from initiation codon 006-050-E05 AK060065 AK099364 J033051P12 J065046L09 J075021F06 J075106P12 TSS from cDNA TSS information AK104418 5'->3' (+) Promoter sequence AK069094
AK102972 J023006I05 J033115K05 TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of AK104418
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | G | clone | + | 29392073 | -151 |
| TSS clone peak | G | clone | + | 29392166 | -58 |
| TSS clone | G | clone | + | 29392169 | -55 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GGCCCCAG | + | 29391917 | 29391924 | -307 | -300 | |||
| OsREG580 | GGCCCCAG | PPDB Motif | PLACE Motif | ||||||
| REG | CGCACGCG | + | 29391931 | 29391938 | -293 | -286 | |||
| OsREG555 | CGCACGCG | PPDB Motif | PLACE Motif | ||||||
| REG | ATCGGACGGAC | + | 29392000 | 29392010 | -224 | -214 | |||
| OsREG484 | ATCGGACG | PPDB Motif | PLACE Motif | ||||||
| OsREG545 | TCGGACGG | PPDB Motif | PLACE Motif | ||||||
| OsREG561 | CGGACGGA | PPDB Motif | PLACE Motif | ||||||
| OsREG623 | GGACGGAC | PPDB Motif | PLACE Motif | ||||||
| REG | CACACACCCGCGC | + | 29392108 | 29392120 | -116 | -104 | |||
| OsREG499 | CACACACC | PPDB Motif | PLACE Motif | ||||||
| OsREG439 | ACCCGCGC | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||