Summary of Gene (AK104418)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon 006-050-E05 AK060065 AK099364 J033051P12 J065046L09 J075021F06 J075106P12 TSS from cDNA TSS information AK104418 5'->3' (+) Promoter sequence AK069094
AK102972 J023006I05 J033115K05 TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | G | clone | + | 29392073 | -151 |
TSS clone peak | G | clone | + | 29392166 | -58 |
TSS clone | G | clone | + | 29392169 | -55 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GGCCCCAG | + | 29391917 | 29391924 | -307 | -300 | |||
OsREG580 | GGCCCCAG | PPDB Motif |   | PLACE Motif |   | ||||
REG | CGCACGCG | + | 29391931 | 29391938 | -293 | -286 | |||
OsREG555 | CGCACGCG | PPDB Motif |   | PLACE Motif |   | ||||
REG | ATCGGACGGAC | + | 29392000 | 29392010 | -224 | -214 | |||
OsREG484 | ATCGGACG | PPDB Motif |   | PLACE Motif |   | ||||
OsREG545 | TCGGACGG | PPDB Motif |   | PLACE Motif |   | ||||
OsREG561 | CGGACGGA | PPDB Motif |   | PLACE Motif |   | ||||
OsREG623 | GGACGGAC | PPDB Motif |   | PLACE Motif |   | ||||
REG | CACACACCCGCGC | + | 29392108 | 29392120 | -116 | -104 | |||
OsREG499 | CACACACC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG439 | ACCCGCGC | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |