PlantPromoterDB promoter information of AK105039
Summary of Gene (AK105039)
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Overview
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Focused view (chromosome 1: 39956341-39957540)
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Genome position
from initiation codon AK067519 AK071195 AK100345 J013031N24 J013045O07 J013052E01 J013063F09 J013098N16 J013112C08 J013112D08 J013112M11 J013156F15 J023003A11 J023022N18 J023034B05 J023034C05 J023034D19 J023047J23 J023052P06 J023057G15 J023082H20 J023083O21 J023087O18 J023113E19 J023121A16 J023131P04 J023146A15 J033024D18 J033043A06 J033072K10 J033088B06 J033111C17 J033118F24 J043030A02 J043034E20 J043034O19 J043040H05 J065006K11 J065020B10 J065123K04 J090023F17 J090036P12 J090042C16 J090048E18 J090052E22 J090062D12 J090065O19 J090079E01 J090090N20 TSS from cDNA TSS information AK105039 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of AK105039
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | T | clone | + | 39957890 | -1 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GTTGGTGG | + | 39957727 | 39957734 | -164 | -157 | |||
| OsREG520 | GTTGGTGG | PPDB Motif | CCAACGG | PLACE Motif | |||||
| REG | GGAGTGGG | + | 39957806 | 39957813 | -85 | -78 | |||
| OsREG532 | GGAGTGGG | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||