PlantPromoterDB promoter information of AK105286
Summary of Gene (AK105286)
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Overview
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Focused view (chromosome 4: 29964541-29963342)
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Genome position
from initiation codon 009-039-D03 AK099753 J013056I19 J013063G03 J013092N19 J033034N08 J043026D24 J065152M17 J065217F18 TSS from cDNA TSS information AK105286 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Promoter Summary of AK105286
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | - | 29961757 | -166 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CTCCTCTCCTCTCTC | - | 29961734 | 29961748 | -143 | -157 |
| Y Patch | CCTCCCTCCCTCCCTCCCCTCCCC | - | 29961758 | 29961781 | -167 | -190 |
| Y Patch | TCTCCTCCCT | - | 29961791 | 29961800 | -200 | -209 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GGACGGCCCATGA | - | 29961833 | 29961845 | -242 | -254 | |||
| OsREG624 | GGACGGCC | PPDB Motif | PLACE Motif | ||||||
| OsREG584 | GACGGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG445 | ACGGCCCA | PPDB Motif | GCCCA | PLACE Motif | AACAAAC | ||||
| OsREG490 | CGGCCCAT | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG517 | GGCCCATG | PPDB Motif | GCCCA, CCATGG | PLACE Motif | |||||
| OsREG609 | GCCCATGA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | GTGGGGCCCACC | - | 29961883 | 29961894 | -292 | -303 | |||
| OsREG631 | GTGGGGCC | PPDB Motif | PLACE Motif | ||||||
| OsREG641 | TGGGGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG647 | GGGGCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG640 | GGGCCCAC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG628 | GGCCCACC | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||