Summary of Gene (AK105286)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon 009-039-D03 AK099753 J013056I19 J013063G03 J013092N19 J033034N08 J043026D24 J065152M17 J065217F18 TSS from cDNA TSS information AK105286 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | - | 29961757 | -166 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CTCCTCTCCTCTCTC | - | 29961734 | 29961748 | -143 | -157 |
Y Patch | CCTCCCTCCCTCCCTCCCCTCCCC | - | 29961758 | 29961781 | -167 | -190 |
Y Patch | TCTCCTCCCT | - | 29961791 | 29961800 | -200 | -209 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GGACGGCCCATGA | - | 29961833 | 29961845 | -242 | -254 | |||
OsREG624 | GGACGGCC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG584 | GACGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG445 | ACGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | AACAAAC  | ||||
OsREG490 | CGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG517 | GGCCCATG | PPDB Motif | GCCCA, CCATGG  | PLACE Motif |   | ||||
OsREG609 | GCCCATGA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GTGGGGCCCACC | - | 29961883 | 29961894 | -292 | -303 | |||
OsREG631 | GTGGGGCC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG641 | TGGGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG647 | GGGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG640 | GGGCCCAC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG628 | GGCCCACC | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |