PlantPromoterDB promoter information of AK107901
Summary of Gene (AK107901)
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Overview
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Focused view (chromosome 11: 26019924-26021123)
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Genome position
from initiation codon TSS from cDNA TSS information AK107901 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of AK107901
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | + | 26023450 | -24 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CCACTATAAATA | + | 26023413 | 26023424 | -61 | -50 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CGGGCCGAAA | + | 26023260 | 26023269 | -214 | -205 | |||
| OsREG568 | CGGGCCGA | PPDB Motif | ACGGGC | PLACE Motif | |||||
| OsREG642 | GGGCCGAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG634 | GGCCGAAA | PPDB Motif | PLACE Motif | ||||||
| REG | TCTGGCCCATG | + | 26023280 | 26023290 | -194 | -184 | |||
| OsREG638 | TCTGGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG577 | CTGGCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG488 | TGGCCCAT | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG517 | GGCCCATG | PPDB Motif | GCCCA, CCATGG | PLACE Motif | |||||
| REG | GGACACGT | + | 26023344 | 26023351 | -130 | -123 | |||
| OsREG451 | GGACACGT | PPDB Motif | ACGT | PLACE Motif | ACGTGKC | ||||
| REG | GCTCAGCT | + | 26023387 | 26023394 | -87 | -80 | |||
| OsREG470 | GCTCAGCT | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||