PlantPromoterDB promoter information of AK107999
Summary of Gene (AK107999)
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Overview
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Focused view (chromosome 9: 23003173-23004372)
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Genome position
from initiation codon 009-090-A03 012-025-C04 AK121320 J013132H18 J023114C04 J023149G14 J033092H13 J065025E07 J090053O06 TSS from cDNA TSS information AK107999 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of AK107999
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | C | clone | + | 23004518 | -55 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTCTCTCCCCTCCTCTT | + | 23004513 | 23004530 | -60 | -43 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CTGGGGCC | + | 23004339 | 23004346 | -234 | -227 | |||
| OsREG580 | CTGGGGCC | PPDB Motif | PLACE Motif | ||||||
| REG | GCCCAATT | + | 23004404 | 23004411 | -169 | -162 | |||
| OsREG433 | GCCCAATT | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | GGTCCAGA | + | 23004460 | 23004467 | -113 | -106 | |||
| OsREG649 | GGTCCAGA | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||