PlantPromoterDB promoter information of AK107999
Summary of Gene (AK107999)
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Overview
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Focused view (chromosome 9: 23004023-23005222)
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Genome position
from initiation codon AK108807 AK121320 J023114C04 J075028G15 J075129K23 J075159K01 J075192F10 J080018P13 J080021E17 J080022I11 J080029C07 J080034N15 J080038L24 J080039C15 J080040E11 J080055L15 J080077G08 J080080A20 J090053O06 TSS from cDNA TSS information AK107999 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of AK107999
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | C | clone | + | 23004518 | -55 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTCTCTCCCCTCCTCTT | + | 23004513 | 23004530 | -60 | -43 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CTGGGGCC | + | 23004339 | 23004346 | -234 | -227 | |||
| OsREG580 | CTGGGGCC | PPDB Motif | PLACE Motif | ||||||
| REG | GCCCAATT | + | 23004404 | 23004411 | -169 | -162 | |||
| OsREG433 | GCCCAATT | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | GGTCCAGA | + | 23004460 | 23004467 | -113 | -106 | |||
| OsREG649 | GGTCCAGA | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||