Summary of Gene (AK109369)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AK109369 5'->3' (-) Promoter sequence AK107370
J075001H07 TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | - | 44032285 | -44 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TTTCGGCC | - | 44032334 | 44032341 | -93 | -100 | |||
OsREG634 | TTTCGGCC | PPDB Motif |   | PLACE Motif |   | ||||
REG | CAAGTGGGCTTTACATGGGCCTTGAGCCCATGGGCT | - | 44032347 | 44032382 | -106 | -141 | |||
OsREG498 | CAAGTGGG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG427 | GTGGGCTT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG421 | TGGGCTTT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG437 | ACATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG517 | CATGGGCC | PPDB Motif | GCCCA, CCATGG  | PLACE Motif |   | ||||
OsREG474 | ATGGGCCT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG430 | TGGGCCTT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG497 | GGGCCTTG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG467 | AGCCCATGGGCT | PPDB Motif | GCCCA, CCATGG  | PLACE Motif |   | ||||
OsREG525 | GCCCATGGGC | PPDB Motif | GCCCA, CCATGG  | PLACE Motif |   | ||||
REG | TCGTGGGCCTCATGGGCCGCA | - | 44032407 | 44032427 | -166 | -186 | |||
OsREG601 | TCGTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG571 | CGTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG472 | GTGGGCCT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG587 | TGGGCCTC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG609 | TCATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG517 | CATGGGCC | PPDB Motif | GCCCA, CCATGG  | PLACE Motif |   | ||||
OsREG490 | ATGGGCCG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG618 | TGGGCCGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG643 | GGGCCGCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | AAATGGGCT | - | 44032441 | 44032449 | -200 | -208 | |||
OsREG422 | AAATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG432 | AATGGGCT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TCGTGGGCCTCATGGGCCGCA | - | 44032475 | 44032495 | -234 | -254 | |||
OsREG601 | TCGTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG571 | CGTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG472 | GTGGGCCT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG587 | TGGGCCTC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG609 | TCATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG517 | CATGGGCC | PPDB Motif | GCCCA, CCATGG  | PLACE Motif |   | ||||
OsREG490 | ATGGGCCG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG618 | TGGGCCGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG643 | GGGCCGCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GCCCAGCCC | - | 44032534 | 44032542 | -293 | -301 | |||
OsREG603 | GCCCAGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG533 | CCCAGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GGGAAAGC | - | 44032565 | 44032572 | -324 | -331 | |||
OsREG621 | GGGAAAGC | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone peak | A | clone | + | 44033657 | AK107370, AK107370, J075001H07 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | AGCTATAAAAA | + | 44033624 | 44033634 | AK107370, J075001H07 | |
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | GGCCCGCA | + | 44033445 | 44033452 | AK107370, J075001H07 | ||||
OsREG632 | GGCCCGCA | PPDB Motif |   | PLACE Motif |   | ||||
REG | GCCCATCCA | + | 44033594 | 44033602 | AK107370, J075001H07 | ||||
OsREG608 | GCCCATCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG534 | CCCATCCA | PPDB Motif | GCCCA  | PLACE Motif |   |