PlantPromoterDB promoter information of AK109493
Summary of Gene (AK109493)
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Overview
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Focused view (chromosome 1: 34095570-34094371)
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Genome position
from initiation codon TSS from cDNA TSS information AK109493 5'->3' (-) Promoter sequence Os01g0767200 TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Promoter Summary of AK109493
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | - | 34093899 | -79 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CTCCCCTTCC | - | 34093912 | 34093921 | -92 | -101 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GCCCCCACGT | - | 34093940 | 34093949 | -120 | -129 | |||
| OsREG613 | GCCCCCAC | PPDB Motif | PLACE Motif | ||||||
| OsREG536 | CCCCCACG | PPDB Motif | PLACE Motif | ||||||
| OsREG450 | CCCCACGT | PPDB Motif | ACGT | PLACE Motif | |||||
| REG | CACGTGTCACCCGCGC | - | 34093984 | 34093999 | -164 | -179 | |||
| OsREG509 | CACGTGTC | PPDB Motif | ACGT | PLACE Motif | ACGTGKC | ||||
| OsREG439 | ACCCGCGC | PPDB Motif | PLACE Motif | ||||||
| REG | GGGGCCCACCT | - | 34094008 | 34094018 | -188 | -198 | |||
| OsREG647 | GGGGCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG640 | GGGCCCAC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG628 | GGCCCACC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG476 | GCCCACCT | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | AGCCCATAC | - | 34094030 | 34094038 | -210 | -218 | |||
| OsREG465 | AGCCCATA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG606 | GCCCATAC | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | TGATGGGCCGGC | - | 34094046 | 34094057 | -226 | -237 | |||
| OsREG607 | TGATGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG590 | GATGGGCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG490 | ATGGGCCG | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG542 | TGGGCCGG | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG615 | GGGCCGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | GGACGGAC | - | 34094078 | 34094085 | -258 | -265 | |||
| OsREG623 | GGACGGAC | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||