Summary of Gene (AK110628)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AK110628 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | + | 21485716 | -56 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CCCCTTCC | + | 21485732 | 21485739 | -40 | -33 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TGTGGGGCCCATGTGGGTCCCAC | + | 21485433 | 21485455 | -339 | -317 | |||
OsREG611 | TGTGGGGC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG631 | GTGGGGCC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG641 | TGGGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG647 | GGGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG489 | GGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG517 | GGCCCATG | PPDB Motif | GCCCA, CCATGG  | PLACE Motif |   | ||||
OsREG437 | GCCCATGT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG622 | GTGGGTCC | PPDB Motif | GGGACCC  | PLACE Motif |   | ||||
OsREG637 | TGGGTCCC | PPDB Motif | GGGACCC  | PLACE Motif |   | ||||
OsREG648 | GGGTCCCA | PPDB Motif | GGGACCC  | PLACE Motif |   | ||||
OsREG650 | GGTCCCAC | PPDB Motif | GGGACCC  | PLACE Motif |   | ||||
REG | CGCCACGTC | + | 21485468 | 21485476 | -304 | -296 | |||
OsREG448 | CGCCACGT | PPDB Motif | ACGT  | PLACE Motif | ACGTGKC  | ||||
OsREG585 | GCCACGTC | PPDB Motif | ACGT  | PLACE Motif | ACGTGKC  | ||||
REG | AACTGGGCCCATT | + | 21485612 | 21485624 | -160 | -148 | |||
OsREG425 | AACTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG454 | ACTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG579 | CTGGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG489 | GGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG431 | GGCCCATT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GCCCGGCC | + | 21485638 | 21485645 | -134 | -127 | |||
OsREG614 | GCCCGGCC | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |