Summary of Gene (AK111366)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon 011-046-D09 012-042-B06 013-035-H12 014-010-B11 014-097-E06 015-003-E12 015-040-B04 AK060536 AK102666 AK119660 J090049N23 J090084G06 TSS from cDNA TSS information AK111366 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | T | clone | - | 27384211 | -61 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CCCCACAC | - | 27384482 | 27384489 | -332 | -339 | |||
OsREG535 | CCCCACAC | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone peak | A | clone | - | 27385839 | AK119660, AK119660, J090049N23, J090084G06, 013-072-A10, 011-046-D09, 009-168-G01, 012-003-C08, AK102666, 014-097-E06, 014-010-B11, D87261, 015-003-E12, 015-040-B04, AK060536, 013-035-H12, 012-042-B06 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CTCTCCCCC | - | 27385804 | 27385812 | 009-168-G01, 011-046-D09, 012-003-C08, 012-042-B06, 013-035-H12, 013-072-A10, 014-010-B11, 014-097-E06, 015-003-E12, 015-040-B04, AK060536, AK102666, AK119660, D87261, J090049N23, J090084G06 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | CCCGGGCC | - | 27385920 | 27385927 | 009-168-G01, 011-046-D09, 012-003-C08, 012-042-B06, 013-035-H12, 013-072-A10, 014-010-B11, 014-097-E06, 015-003-E12, 015-040-B04, AK060536, AK102666, AK119660, D87261, J090049N23, J090084G06 | ||||
OsREG539 | CCCGGGCC | PPDB Motif |   | PLACE Motif |   | ||||
REG | CGGGTCCCCACCAC | - | 27385948 | 27385961 | 009-168-G01, 011-046-D09, 012-003-C08, 012-042-B06, 013-035-H12, 013-072-A10, 014-010-B11, 014-097-E06, 015-003-E12, 015-040-B04, AK060536, AK102666, AK119660, D87261, J090049N23, J090084G06 | ||||
OsREG569 | CGGGTCCC | PPDB Motif | GGGACCC  | PLACE Motif |   | ||||
OsREG527 | CCCACCAC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GGGGCCCGGT | - | 27385973 | 27385982 | 009-168-G01, 011-046-D09, 012-003-C08, 012-042-B06, 013-035-H12, 013-072-A10, 014-010-B11, 014-097-E06, 015-003-E12, 015-040-B04, AK060536, AK102666, AK119660, D87261, J090049N23, J090084G06 | ||||
OsREG567 | GGGGCCCG | PPDB Motif | ACGGGC  | PLACE Motif |   | ||||
OsREG543 | GGGCCCGG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG441 | GGCCCGGT | PPDB Motif |   | PLACE Motif |   | ||||
REG | ACGCGTCCTGGGCCGTCGGATC | - | 27386009 | 27386030 | 009-168-G01, 011-046-D09, 012-003-C08, 012-042-B06, 013-035-H12, 013-072-A10, 014-010-B11, 014-097-E06, 015-003-E12, 015-040-B04, AK060536, AK102666, AK119660, D87261, J090049N23, J090084G06 | ||||
OsREG442 | ACGCGTCC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG550 | CCTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG565 | CTGGGCCG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG445 | TGGGCCGT | PPDB Motif | GCCCA  | PLACE Motif | AACAAAC  | ||||
OsREG584 | GGGCCGTC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG546 | CCGTCGGA | PPDB Motif | CCGAC  | PLACE Motif | CGACG  | ||||
OsREG483 | CGTCGGAT | PPDB Motif | CCGAC  | PLACE Motif | CGACG  | ||||
OsREG588 | GTCGGATC | PPDB Motif | CCGAC  | PLACE Motif |   | ||||
REG | CGGGTCCC | - | 27386059 | 27386066 | 009-168-G01, 011-046-D09, 012-003-C08, 012-042-B06, 013-035-H12, 013-072-A10, 014-010-B11, 014-097-E06, 015-003-E12, 015-040-B04, AK060536, AK102666, AK119660, D87261, J090049N23, J090084G06 | ||||
OsREG569 | CGGGTCCC | PPDB Motif | GGGACCC  | PLACE Motif |   | ||||
REG | GTGTGGGGCCCACGCG | - | 27386074 | 27386089 | 009-168-G01, 011-046-D09, 012-003-C08, 012-042-B06, 013-035-H12, 013-072-A10, 014-010-B11, 014-097-E06, 015-003-E12, 015-040-B04, AK060536, AK102666, AK119660, D87261, J090049N23, J090084G06 | ||||
OsREG535 | GTGTGGGG | PPDB Motif |   | PLACE Motif |   | ||||
OsREG611 | TGTGGGGC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG631 | GTGGGGCC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG641 | TGGGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG647 | GGGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG640 | GGGCCCAC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG571 | GGCCCACG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG602 | GCCCACGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG530 | CCCACGCG | PPDB Motif | GCCCA  | PLACE Motif |   |