PlantPromoterDB promoter information of AK119940
Summary of Gene (AK119940)
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Overview
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Focused view (chromosome 7: 29085163-29086362)
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Genome position
from initiation codon J013100B13 J033058L23 J075039F06 J075055J17 J075179G20 J075191I03 J075194O14 TSS from cDNA TSS information AK119940 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of AK119940
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | + | 29083791 | -172 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | GGCCTATATATAAGCG | + | 29083754 | 29083769 | -209 | -194 |
| Y Patch | CCTCCCTCCTCCCCC | + | 29083774 | 29083788 | -189 | -175 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GCCCAATT | + | 29083511 | 29083518 | -452 | -445 | |||
| OsREG433 | GCCCAATT | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | CACCGCAC | + | 29083538 | 29083545 | -425 | -418 | |||
| OsREG500 | CACCGCAC | PPDB Motif | PLACE Motif | ||||||
| REG | CCCACCAC | + | 29083552 | 29083559 | -411 | -404 | |||
| OsREG527 | CCCACCAC | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | CGCACCGCACCGCAC | + | 29083652 | 29083666 | -311 | -297 | |||
| OsREG554 | CGCACCGCACCGC | PPDB Motif | PLACE Motif | ||||||
| OsREG500 | CACCGCACCGCAC | PPDB Motif | PLACE Motif | ||||||
| REG | GCGCGGGT | + | 29083742 | 29083749 | -221 | -214 | |||
| OsREG439 | GCGCGGGT | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||