PlantPromoterDB promoter information of AK120270
Summary of Gene (AK120270)
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Overview
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Focused view (chromosome 11: 26026151-26027350)
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Genome position
from initiation codon TSS from cDNA TSS information AK120270 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of AK120270
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | + | 26027149 | -2 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTCCTCCCC | + | 26027160 | 26027169 | 9 | 18 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ATCGGACGGCCCACGT | + | 26027054 | 26027069 | -97 | -82 | |||
| OsREG484 | ATCGGACG | PPDB Motif | PLACE Motif | ||||||
| OsREG545 | TCGGACGG | PPDB Motif | PLACE Motif | ||||||
| OsREG562 | CGGACGGC | PPDB Motif | PLACE Motif | ||||||
| OsREG624 | GGACGGCC | PPDB Motif | PLACE Motif | ||||||
| OsREG584 | GACGGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG445 | ACGGCCCA | PPDB Motif | GCCCA | PLACE Motif | AACAAAC | ||||
| OsREG564 | CGGCCCAC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG571 | GGCCCACG | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG449 | GCCCACGT | PPDB Motif | GCCCA, ACGT | PLACE Motif | ACGTSSSC | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||