PlantPromoterDB promoter information of AK120527
Summary of Gene (AK120527)
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Overview
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Focused view (chromosome 3: 8804327-8805526)
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Genome position
from initiation codon 006-033-E05 006-035-A03 006-057-D09 006-058-D03 006-061-B04 006-076-C01 006-089-C09 006-092-D01 006-100-D06 009-014-G04 009-060-C06 009-098-A06 AK061468 AK104116 AK104424 J013127C20 J023031E11 J023150F18 J033037G14 J065073K02 J065085P13 J065161B21 J065197G23 TSS from cDNA TSS information AK120527 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of AK120527
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | G | clone | + | 8804214 | -113 |
| TSS clone peak | G | clone | + | 8804263 | -64 |
| TSS clone | A | clone | + | 8804265 | -62 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TAATGGGCCGTTT | + | 8803992 | 8804004 | -335 | -323 | |||
| OsREG610 | TAATGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG431 | AATGGGCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG490 | ATGGGCCG | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG445 | TGGGCCGT | PPDB Motif | GCCCA | PLACE Motif | AACAAAC | ||||
| OsREG423 | GGGCCGTT | PPDB Motif | GCCCA, AAACG(C/G) | PLACE Motif | |||||
| OsREG420 | GGCCGTTT | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||