PlantPromoterDB promoter information of AK120873
Summary of Gene (AK120873)
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Overview
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Focused view (chromosome 3: 21410224-21411423)
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Genome position
from initiation codon TSS from cDNA TSS information AK120873 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of AK120873
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | G | clone | + | 21410470 | -4 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TGAGGGAC | + | 21410212 | 21410219 | -262 | -255 | |||
| OsREG652 | TGAGGGAC | PPDB Motif | GGGACCC | PLACE Motif | |||||
| REG | CCCATCCAGCCCATTA | + | 21410266 | 21410281 | -208 | -193 | |||
| OsREG534 | CCCATCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG523 | CCAGCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG491 | CAGCCCAT | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG432 | AGCCCATT | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG610 | GCCCATTA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | GCCCAAAC | + | 21410302 | 21410309 | -172 | -165 | |||
| OsREG593 | GCCCAAAC | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||