PlantPromoterDB promoter information of AK121454
Summary of Gene (AK121454)
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Overview
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Focused view (chromosome 4: 23313294-23312095)
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Genome position
from initiation codon J033061F22 J033103F23 J033125F06 J090090G07 J100041L11 J100049J15 J100053M04 J100065H15 TSS from cDNA TSS information AK121454 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Promoter Summary of AK121454
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | - | 23310960 | -16 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | ACCCTATAAATT | - | 23310984 | 23310995 | -40 | -51 |
| Y Patch | TTCTCCTC | - | 23310924 | 23310931 | 20 | 13 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TCCACGCC | - | 23311043 | 23311050 | -99 | -106 | |||
| OsREG636 | TCCACGCC | PPDB Motif | PLACE Motif | ||||||
| REG | CAACGGTC | - | 23311057 | 23311064 | -113 | -120 | |||
| OsREG495 | CAACGGTC | PPDB Motif | CCAACGG | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||