Summary of Gene (AY551916)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon AF058697 AF139664 AK121171 AY332478 J023081C04 TSS from cDNA TSS information AY551916 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | G | clone | - | 31804723 | -306 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTCCCCC | - | 31804706 | 31804713 | -289 | -296 |
Y Patch | TCCTCCTCCTCCTCCTCCTC | - | 31804724 | 31804743 | -307 | -326 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CCTCGCCC | - | 31804849 | 31804856 | -432 | -439 | |||
OsREG549 | CCTCGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GGGGCCCGGGCCGGC | - | 31804861 | 31804875 | -444 | -458 | |||
OsREG567 | GGGGCCCG | PPDB Motif | ACGGGC  | PLACE Motif |   | ||||
OsREG543 | GGGCCCGG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG539 | GGCCCGGGCC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG544 | CCGGGCCG | PPDB Motif |   | PLACE Motif |   | ||||
OsREG615 | GGGCCGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | CGCACGCGTCGC | - | 31804884 | 31804895 | -467 | -478 | |||
OsREG555 | CGCACGCG | PPDB Motif |   | PLACE Motif |   | ||||
OsREG559 | CGCGTCGC | PPDB Motif |   | PLACE Motif | CGACG  | ||||
REG | TCGGCCCAGAAAAGCCCACGA | - | 31804908 | 31804928 | -491 | -511 | |||
OsREG658 | TCGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG565 | CGGCCCAG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG629 | GGCCCAGA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG419 | AAAAGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG421 | AAAGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG427 | AAGCCCAC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG463 | AGCCCACG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG601 | GCCCACGA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GACGGCCCAAAA | - | 31804934 | 31804945 | -517 | -528 | |||
OsREG584 | GACGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG445 | ACGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | AACAAAC  | ||||
OsREG563 | CGGCCCAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG625 | GGCCCAAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG592 | GCCCAAAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | ATGGCCCACCC | - | 31804965 | 31804975 | -548 | -558 | |||
OsREG487 | ATGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG654 | TGGCCCAC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG628 | GGCCCACC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG600 | GCCCACCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | AATTGGGC | - | 31804986 | 31804993 | -569 | -576 | |||
OsREG433 | AATTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |