PlantPromoterDB promoter information of AY870601
Summary of Gene (AY870601)
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Overview
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Focused view (chromosome 1: 26605491-26604292)
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Genome position
from initiation codon TSS from cDNA TSS information AY870601 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Promoter Summary of AY870601
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | G | clone | - | 26604063 | -22 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CTCTCCCCC | - | 26604074 | 26604082 | -33 | -41 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ACGCGTCC | - | 26604117 | 26604124 | -76 | -83 | |||
| OsREG442 | ACGCGTCC | PPDB Motif | PLACE Motif | ||||||
| REG | CGGCCCGGCC | - | 26604165 | 26604174 | -124 | -133 | |||
| OsREG544 | CGGCCCGG | PPDB Motif | PLACE Motif | ||||||
| OsREG616 | GGCCCGGC | PPDB Motif | PLACE Motif | ||||||
| OsREG614 | GCCCGGCC | PPDB Motif | PLACE Motif | ||||||
| REG | AGTGACAC | - | 26604232 | 26604239 | -191 | -198 | |||
| OsREG477 | AGTGACAC | PPDB Motif | PLACE Motif | TGAC | |||||
| REG | GCCCACCAC | - | 26604307 | 26604315 | -266 | -274 | |||
| OsREG599 | GCCCACCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG527 | CCCACCAC | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||