PlantPromoterDB promoter information of D21285
Summary of Gene (D21285)
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Overview
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Focused view (chromosome 3: 8855447-8856646)
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Genome position
from initiation codon 013-051-G08 014-002-C05 014-002-H02 014-005-A09 014-008-D02 014-008-G06 014-009-C12 014-010-A07 014-012-H03 014-013-E03 014-014-D03 014-028-C09 014-037-G05 014-038-E04 014-041-F08 014-049-E11 014-050-A05 014-053-F10 014-054-C04 014-056-A01 014-060-A08 014-072-C09 014-072-D02 014-077-G08 014-080-C10 014-098-E01 014-100-C02 014-100-E03 014-100-E10 015-061-D06 016-033-H10 AB110191 AK073671 AK104129 AK119239 AK119616 AK119664 AK119675 J033051H23 J065036L24 J065045J20 J065104C03 J065109J20 J065116F24 J065146F06 J065146P18 J065167A09 J065183K12 J075019J15 J075112F10 J075150H04 J075159N20 J075164P19 J075185O05 J100030A19 J100044E07 TSS from cDNA TSS information D21285 5'->3' (+) Promoter sequence J075087I01
J090027J05 J090056C16 TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of D21285
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | + | 8856230 | -217 |
| TSS clone peak | A | clone | + | 8856343 | -104 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CCCCTCCT | + | 8856323 | 8856330 | -124 | -117 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GCCCAGCCC | + | 8855931 | 8855939 | -516 | -508 | |||
| OsREG603 | GCCCAGCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG533 | CCCAGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | TGTGGGCCCCA | + | 8856070 | 8856080 | -377 | -367 | |||
| OsREG627 | TGTGGGCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG640 | GTGGGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG647 | TGGGCCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG641 | GGGCCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | ATGGCCCACA | + | 8856088 | 8856097 | -359 | -350 | |||
| OsREG487 | ATGGCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG654 | TGGCCCAC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG627 | GGCCCACA | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||