Summary of Gene (J013000B17)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information J013000B17 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | G | clone | + | 22258325 | -65 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CCCACTCC | + | 22258063 | 22258070 | -327 | -320 | |||
OsREG532 | CCCACTCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | CTGGCCCAGCC | + | 22258080 | 22258090 | -310 | -300 | |||
OsREG577 | CTGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG578 | TGGCCCAG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG620 | GGCCCAGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG603 | GCCCAGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GCCCACCCCATCCA | + | 22258142 | 22258155 | -248 | -235 | |||
OsREG600 | GCCCACCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG534 | CCCATCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | CCCATCCA | + | 22258175 | 22258182 | -215 | -208 | |||
OsREG534 | CCCATCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TCCACGCC | + | 22258263 | 22258270 | -127 | -120 | |||
OsREG636 | TCCACGCC | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |