PlantPromoterDB promoter information of J013000C05
Summary of Gene (J013000C05)
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Overview
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Focused view (chromosome 4: 32786591-32785392)
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Genome position
from initiation codon 009-009-D04 009-010-G07 009-048-H10 013-066-B10 014-093-G08 015-025-C07 AK064789 AK104813 J013043J05 J013058C15 J013058E15 J013072N16 J013102O16 J090060K17 J090069E22 J100030G19 J100050F15 J100050L20 J100054F18 J100083P05 TSS from cDNA TSS information J013000C05 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Promoter Summary of J013000C05
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | None | None | None | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone peak | G | clone | - | 32785591 | J100030G19, J100050F15, J100050L20, J100083P05, J100054F18, 013-066-B10, J013072N16, J013058C15, J013058E15, J013102O16, J090069E22, 009-010-G07, 014-093-G08, 009-009-D04, 009-048-H10, 015-025-C07 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CCTCTCCTCTC | - | 32785554 | 32785564 | 009-009-D04, 009-010-G07, 009-048-H10, 013-066-B10, 014-093-G08, 015-025-C07, J013058C15, J013058E15, J013072N16, J013102O16, J090069E22, J100030G19, J100050F15, J100050L20, J100054F18, J100083P05 | |
| Y Patch | CCCCTTCCTCCTCT | - | 32785573 | 32785586 | 009-009-D04, 009-010-G07, 009-048-H10, 013-066-B10, 014-093-G08, 015-025-C07, J013058C15, J013058E15, J013072N16, J013102O16, J090069E22, J100030G19, J100050F15, J100050L20, J100054F18, J100083P05 | |
| Y Patch | TCCTCCTCTCTCTCTCTCT | - | 32785619 | 32785637 | 009-009-D04, 009-010-G07, 009-048-H10, 013-066-B10, 014-093-G08, 015-025-C07, J013058C15, J013058E15, J013072N16, J013102O16, J090069E22, J100030G19, J100050F15, J100050L20, J100054F18, J100083P05 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | GCCCACCAC | - | 32785676 | 32785684 | 009-009-D04, 009-010-G07, 009-048-H10, 013-066-B10, 014-093-G08, 015-025-C07, J013058C15, J013058E15, J013072N16, J013102O16, J090069E22, J100030G19, J100050F15, J100050L20, J100054F18, J100083P05 | ||||
| OsREG599 | GCCCACCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG527 | CCCACCAC | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | CGGCCCGGT | - | 32785694 | 32785702 | 009-009-D04, 009-010-G07, 009-048-H10, 013-066-B10, 014-093-G08, 015-025-C07, J013058C15, J013058E15, J013072N16, J013102O16, J090069E22, J100030G19, J100050F15, J100050L20, J100054F18, J100083P05 | ||||
| OsREG544 | CGGCCCGG | PPDB Motif | PLACE Motif | ||||||
| OsREG441 | GGCCCGGT | PPDB Motif | PLACE Motif | ||||||
| REG | TCCACGCCTC | - | 32785741 | 32785750 | 009-009-D04, 009-010-G07, 009-048-H10, 013-066-B10, 014-093-G08, 015-025-C07, J013058C15, J013058E15, J013072N16, J013102O16, J090069E22, J100030G19, J100050F15, J100050L20, J100054F18, J100083P05 | ||||
| OsREG636 | TCCACGCC | PPDB Motif | PLACE Motif | ||||||
| OsREG503 | CACGCCTC | PPDB Motif | PLACE Motif | ||||||