Summary of Gene (J013058E15)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon J090060K17 J090069E22 TSS from cDNA TSS information J013058E15 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | G | clone | - | 32785591 | -649 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CCTCTCCTCTC | - | 32785554 | 32785564 | -612 | -622 |
Y Patch | CCCCTTCCTCCTCT | - | 32785573 | 32785586 | -631 | -644 |
Y Patch | TCCTCCTCTCTCTCTCTCT | - | 32785619 | 32785637 | -677 | -695 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GCCCACCAC | - | 32785676 | 32785684 | -734 | -742 | |||
OsREG599 | GCCCACCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG527 | CCCACCAC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | CGGCCCGGT | - | 32785694 | 32785702 | -752 | -760 | |||
OsREG544 | CGGCCCGG | PPDB Motif |   | PLACE Motif |   | ||||
OsREG441 | GGCCCGGT | PPDB Motif |   | PLACE Motif |   | ||||
REG | TCCACGCCTC | - | 32785741 | 32785750 | -799 | -808 | |||
OsREG636 | TCCACGCC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG503 | CACGCCTC | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |