PlantPromoterDB promoter information of J013058E15
Summary of Gene (J013058E15)
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Overview
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Focused view (chromosome 4: 32786842-32785643)
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Genome position
from initiation codon J090060K17 J090069E22 TSS from cDNA TSS information J013058E15 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Promoter Summary of J013058E15
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | G | clone | - | 32785591 | -649 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CCTCTCCTCTC | - | 32785554 | 32785564 | -612 | -622 |
| Y Patch | CCCCTTCCTCCTCT | - | 32785573 | 32785586 | -631 | -644 |
| Y Patch | TCCTCCTCTCTCTCTCTCT | - | 32785619 | 32785637 | -677 | -695 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GCCCACCAC | - | 32785676 | 32785684 | -734 | -742 | |||
| OsREG599 | GCCCACCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG527 | CCCACCAC | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | CGGCCCGGT | - | 32785694 | 32785702 | -752 | -760 | |||
| OsREG544 | CGGCCCGG | PPDB Motif | PLACE Motif | ||||||
| OsREG441 | GGCCCGGT | PPDB Motif | PLACE Motif | ||||||
| REG | TCCACGCCTC | - | 32785741 | 32785750 | -799 | -808 | |||
| OsREG636 | TCCACGCC | PPDB Motif | PLACE Motif | ||||||
| OsREG503 | CACGCCTC | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||