PlantPromoterDB promoter information of J013073J17
Summary of Gene (J013073J17)
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Overview
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Focused view (chromosome 2: 1213878-1215077)
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Genome position
from initiation codon 016-017-F04 AK065876 J013047J07 J033057C03 J033087C11 J033108J20 J043015P08 TSS from cDNA TSS information J013073J17 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of J013073J17
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | None | None | None | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone peak | A | clone | + | 1214007 | J033057C03, J033108J20, 016-017-F04, J033087C11, J043015P08 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCCTCCCC | + | 1214009 | 1214016 | 016-017-F04, J033057C03, J033087C11, J033108J20, J043015P08 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | AGGTGGGCCCCACCTG | + | 1213875 | 1213890 | 016-017-F04, J033057C03, J033087C11, J033108J20, J043015P08 | ||||
| OsREG476 | AGGTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG628 | GGTGGGCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG640 | GTGGGCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG647 | TGGGCCCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG641 | GGGCCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG631 | GGCCCCAC | PPDB Motif | PLACE Motif | ||||||
| OsREG612 | GCCCCACC | PPDB Motif | PLACE Motif | ||||||
| OsREG514 | CCCACCTG | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | GCCCACGC | + | 1213918 | 1213925 | 016-017-F04, J033057C03, J033087C11, J033108J20, J043015P08 | ||||
| OsREG602 | GCCCACGC | PPDB Motif | GCCCA | PLACE Motif | |||||