PlantPromoterDB promoter information of J013089N03
Summary of Gene (J013089N03)
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Overview
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Focused view (chromosome 7: 4300468-4301667)
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Genome position
from initiation codon 012-067-A05 AK060932 AK062119 AK066918 AK070512 J023055B17 J090016G12 J100071L19 TSS from cDNA TSS information J013089N03 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of J013089N03
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | None | None | None | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone peak | T | clone | + | 4301530 | AK060932 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | TCAGCCCAAAT | + | 4301327 | 4301337 | AK060932 | ||||
| OsREG657 | TCAGCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG511 | CAGCCCAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG457 | AGCCCAAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG493 | GCCCAAAT | PPDB Motif | GCCCA | PLACE Motif | |||||