Summary of Gene (J013096A05)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information J013096A05 5'->3' (+) Promoter sequence AK071845
TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | G | clone | + | 6481395 | -28 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CCCACGCG | + | 6481264 | 6481271 | -159 | -152 | |||
OsREG530 | CCCACGCG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | AAATGGGCCGTT | + | 6481309 | 6481320 | -114 | -103 | |||
OsREG422 | AAATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG431 | AATGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG490 | ATGGGCCG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG445 | TGGGCCGT | PPDB Motif | GCCCA  | PLACE Motif | AACAAAC  | ||||
OsREG423 | GGGCCGTT | PPDB Motif | GCCCA, AAACG(C/G)  | PLACE Motif |   | ||||
REG | ATGGCCCACCAAC | + | 6481325 | 6481337 | -98 | -86 | |||
OsREG487 | ATGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG654 | TGGCCCAC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG628 | GGCCCACC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG599 | GCCCACCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG520 | CCACCAAC | PPDB Motif | CCAACGG  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |