PlantPromoterDB promoter information of J013096B07
Summary of Gene (J013096B07)
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Overview
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Focused view (chromosome 9: 20782376-20781177)
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Genome position
from initiation codon J023121E21 J075080H01 J075082K02 J075142H01 J100078A03 J100085B02 TSS from cDNA TSS information J013096B07 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Promoter Summary of J013096B07
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | None | None | None | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | GGACGGCT | - | 20781202 | 20781209 | AK070780, AK103563, AY054407, J013058P06, J013093G04, J023007G05, J023091A08, J023136K23, J023138D20, J033022N20, J033065N15, J033109L23, J053073C08, J075094J24, J075106P21 | ||||
| OsREG468 | GGACGGCT | PPDB Motif | PLACE Motif | ||||||
| REG | CCCATCCA | - | 20781229 | 20781236 | AK070780, AK103563, AY054407, J013058P06, J013093G04, J023007G05, J023091A08, J023136K23, J023138D20, J033022N20, J033065N15, J033109L23, J053073C08, J075094J24, J075106P21 | ||||
| OsREG534 | CCCATCCA | PPDB Motif | GCCCA | PLACE Motif | |||||