PlantPromoterDB promoter information of J013123D02
Summary of Gene (J013123D02)
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Overview
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Focused view (chromosome 3: 2115953-2114754)
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Genome position
from initiation codon AK072119 J013025I16 J023048B09 J023048C09 J065027O03 J065028C03 J065080H22 J065102H03 J065137P14 J065143C23 J065168G06 J065192N07 J065205I11 J075040F03 J075052H20 J075118L18 J075126C19 J075173L07 TSS from cDNA TSS information J013123D02 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Promoter Summary of J013123D02
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | A | clone | - | 2115061 | -108 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | GTCTATAAATG | - | 2115087 | 2115097 | -134 | -144 |
| Y Patch | CTCTCTCT | - | 2115044 | 2115051 | -91 | -98 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GCCCCACC | - | 2115167 | 2115174 | -214 | -221 | |||
| OsREG612 | GCCCCACC | PPDB Motif | PLACE Motif | ||||||
| REG | AGCCCATAC | - | 2115315 | 2115323 | -362 | -370 | |||
| OsREG465 | AGCCCATA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG606 | GCCCATAC | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | TGTCAGTG | - | 2115327 | 2115334 | -374 | -381 | |||
| OsREG510 | TGTCAGTG | PPDB Motif | PLACE Motif | TGAC | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||