Summary of Gene (J013123D02)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon AK072119 J013025I16 J023048B09 J023048C09 J065027O03 J065028C03 J065080H22 J065102H03 J065137P14 J065143C23 J065168G06 J065192N07 J065205I11 J075040F03 J075052H20 J075118L18 J075126C19 J075173L07 TSS from cDNA TSS information J013123D02 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | - | 2115061 | -108 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | GTCTATAAATG | - | 2115087 | 2115097 | -134 | -144 |
Y Patch | CTCTCTCT | - | 2115044 | 2115051 | -91 | -98 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GCCCCACC | - | 2115167 | 2115174 | -214 | -221 | |||
OsREG612 | GCCCCACC | PPDB Motif |   | PLACE Motif |   | ||||
REG | AGCCCATAC | - | 2115315 | 2115323 | -362 | -370 | |||
OsREG465 | AGCCCATA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG606 | GCCCATAC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TGTCAGTG | - | 2115327 | 2115334 | -374 | -381 | |||
OsREG510 | TGTCAGTG | PPDB Motif |   | PLACE Motif | TGAC  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |