PlantPromoterDB promoter information of J013123M06
Summary of Gene (J013123M06)
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Overview
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Focused view (chromosome 4: 35575509-35576708)
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Genome position
from initiation codon 009-068-D03 015-097-H12 AK062547 AK066910 AK098928 AK104333 J013023N16 J013031I07 J013063L06 J013091C11 J013126D14 J023023E09 J023039C19 J023068D23 J023080C21 J033092J17 J033112P12 J033135O08 J053023C13 J065030O05 J065065P07 J065190O06 J090011M19 J090061F08 J090064H09 J090064P11 TSS from cDNA TSS information J013123M06 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of J013123M06
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 35576013 | -496 |
| TSS clone | C | clone | + | 35576014 | -495 |
| TSS clone peak | A | clone | + | 35576019 | -490 |
| TSS clone | G | clone | + | 35576050 | -459 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TATAAAAG | + | 35575978 | 35575985 | -531 | -524 |
| Y Patch | TCTCCCCC | + | 35576002 | 35576009 | -507 | -500 |
| Y Patch | TCTCCTCC | + | 35576042 | 35576049 | -467 | -460 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CCACTGACACGTGGG | + | 35575905 | 35575919 | -604 | -590 | |||
| OsREG522 | CCACTGAC | PPDB Motif | PLACE Motif | TGAC | |||||
| OsREG510 | CACTGACA | PPDB Motif | PLACE Motif | TGAC | |||||
| OsREG509 | GACACGTG | PPDB Motif | ACGT | PLACE Motif | ACGTGKC | ||||
| OsREG434 | ACACGTGG | PPDB Motif | ACGT | PLACE Motif | |||||
| OsREG508 | CACGTGGG | PPDB Motif | ACGT | PLACE Motif | |||||
| REG | AATGGGCT | + | 35575945 | 35575952 | -564 | -557 | |||
| OsREG432 | AATGGGCT | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||