Summary of Gene (J013126N16)
|
Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon AK101589 AK102723 J013059N19 J033051A22 J033105J16 J043012N08 J090021O09 J090059D19 J100054M02 J100066B02 J100089D10 TSS from cDNA TSS information J013126N16 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
|
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | G | clone | + | 31149774 | -153 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CTCTCTCTCTCCC | + | 31149755 | 31149767 | -172 | -160 |
Y Patch | TCTTCCTCTCTCTC | + | 31149802 | 31149815 | -125 | -112 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | AATTGGGCTGA | + | 31149634 | 31149644 | -293 | -283 | |||
OsREG433 | AATTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG460 | ATTGGGCT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG511 | TTGGGCTG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG657 | TGGGCTGA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | TATTGGGCCAA | + | 31149656 | 31149666 | -271 | -261 | |||
OsREG596 | TATTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG492 | ATTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG659 | TTGGGCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG660 | TGGGCCAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | CGGGCCGATGGGCCGA | + | 31149678 | 31149693 | -249 | -234 | |||
OsREG568 | CGGGCCGA | PPDB Motif | ACGGGC  | PLACE Motif |   | ||||
OsREG553 | CGATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG590 | GATGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG490 | ATGGGCCG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG658 | TGGGCCGA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GGCCCGGCCCATCC | + | 31149720 | 31149733 | -207 | -194 | |||
OsREG616 | GGCCCGGC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG614 | GCCCGGCC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG538 | CCCGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG542 | CCGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG490 | CGGCCCAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG590 | GGCCCATC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG608 | GCCCATCC | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |