Promoter Summary of J013127E01

TSS information

Type	Sequence	TPM score	Genome position		Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available		Not Available

TSS information from cDNA

Type	Sequence	Score	Genome position		Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available		Not Available

Core promoter information

Type	Sequence	Genome position			Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available			Not Available
TATA Box	None	None			None
Y Patch	None	None			None
GA	None	None			None
Inr	None	None			None

REG information

Type		Sequence	Annotation	Genome position			Position from initiation codon
				Strand	Start	End	Start	End
REG		None	None			None

Other Reliable Promoter Summary

TSS information

Type	Sequence	TPM score	Genome position		Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available		Not Available

TSS information from cDNA

Type	Sequence	Score	Genome position		Gene model
			Strand	Position
TSS clone	G	clone	+	3277366	AK073392, J065059G22, AK073392, J033041E13, J033129C08, AK101469, J023013N11, 016-016-E08, J033121H19, J033050O09, J090061C17, J033140H24, J033112J24, J023054N21, J090096D21, J090007L06, J023038J11, J065212L09, J100039F12, J090045O06, J090060L04, J100053N06, J090010M02, J090013M20, J090066L03, J033120K10, J013152M22, J033093G05, J090044I15, J090089E13, J090062F10, J075047P09, J075063C18, J075076E07, J075077F14, J075086C22, J075161L09, J075177K20, 009-156-F07, 012-089-A02, 012-025-F01, J033113D05, AK099225, J065020I18, J065058L01, J033094J17, 005-010-H01, AY236158
TSS clone peak	G	clone	+	3277383	AK073392, J065059G22, AK073392, J033041E13, J033129C08, AK101469, J023013N11, 016-016-E08, J033121H19, J033050O09, J090061C17, J033140H24, J033112J24, J023054N21, J090096D21, J090007L06, J023038J11, J065212L09, J100039F12, J090045O06, J090060L04, J100053N06, J090010M02, J090013M20, J090066L03, J033120K10, J013152M22, J033093G05, J090044I15, J090089E13, J090062F10, J075047P09, J075063C18, J075076E07, J075077F14, J075086C22, J075161L09, J075177K20, 009-156-F07, 012-089-A02, 012-025-F01, J033113D05, AK099225, J065020I18, J065058L01, J033094J17, 005-010-H01, AY236158
TSS clone	A	clone	+	3277405	AK073392, J065059G22, AK073392, J033041E13, J033129C08, AK101469, J023013N11, 016-016-E08, J033121H19, J033050O09, J090061C17, J033140H24, J033112J24, J023054N21, J090096D21, J090007L06, J023038J11, J065212L09, J100039F12, J090045O06, J090060L04, J100053N06, J090010M02, J090013M20, J090066L03, J033120K10, J013152M22, J033093G05, J090044I15, J090089E13, J090062F10, J075047P09, J075063C18, J075076E07, J075077F14, J075086C22, J075161L09, J075177K20, 009-156-F07, 012-089-A02, 012-025-F01, J033113D05, AK099225, J065020I18, J065058L01, J033094J17, 005-010-H01, AY236158

Core promoter information

Type	Sequence	Genome position			Gene model
		Strand	Start	End
initiator	Not Available	Not Available			Not Available
TATA Box	CCTTTATAAGCG	+	3277352	3277363	005-010-H01, 009-156-F07, 012-025-F01, 012-089-A02, 016-016-E08, AK073392, AK099225, AK101469, AY236158, J013152M22, J023013N11, J023038J11, J023054N21, J033041E13, J033050O09, J033093G05, J033094J17, J033112J24, J033113D05, J033120K10, J033121H19, J033129C08, J033140H24, J065020I18, J065058L01, J065059G22, J065212L09, J075047P09, J075063C18, J075076E07, J075077F14, J075086C22, J075161L09, J075177K20, J090007L06, J090010M02, J090013M20, J090044I15, J090045O06, J090060L04, J090061C17, J090062F10, J090066L03, J090089E13, J090096D21, J100039F12, J100053N06
Y Patch	None	None			None
GA	None	None			None
Inr	None	None			None

REG information

Type		Sequence	Annotation	Genome position			Gene model
				Strand	Start	End
REG		TTGTGGGCCAGAGCCCATCC		+	3277234	3277253	005-010-H01, 009-156-F07, 012-025-F01, 012-089-A02, 016-016-E08, AK073392, AK099225, AK101469, AY236158, J013152M22, J023013N11, J023038J11, J023054N21, J033041E13, J033050O09, J033093G05, J033094J17, J033112J24, J033113D05, J033120K10, J033121H19, J033129C08, J033140H24, J065020I18, J065058L01, J065059G22, J065212L09, J075047P09, J075063C18, J075076E07, J075077F14, J075086C22, J075161L09, J075177K20, J090007L06, J090010M02, J090013M20, J090044I15, J090045O06, J090060L04, J090061C17, J090062F10, J090066L03, J090089E13, J090096D21, J100039F12, J100053N06
	OsREG597	TTGTGGGC		PPDB Motif	GCCCA		PLACE Motif
	OsREG627	TGTGGGCC		PPDB Motif	GCCCA		PLACE Motif
	OsREG654	GTGGGCCA		PPDB Motif	GCCCA		PLACE Motif
	OsREG577	TGGGCCAG		PPDB Motif	GCCCA		PLACE Motif
	OsREG638	GGGCCAGA		PPDB Motif	GCCCA		PLACE Motif
	OsREG466	AGCCCATC		PPDB Motif	GCCCA		PLACE Motif
	OsREG608	GCCCATCC		PPDB Motif	GCCCA		PLACE Motif
REG		CCCAGCCCAGCCCAG		+	3277257	3277271	005-010-H01, 009-156-F07, 012-025-F01, 012-089-A02, 016-016-E08, AK073392, AK099225, AK101469, AY236158, J013152M22, J023013N11, J023038J11, J023054N21, J033041E13, J033050O09, J033093G05, J033094J17, J033112J24, J033113D05, J033120K10, J033121H19, J033129C08, J033140H24, J065020I18, J065058L01, J065059G22, J065212L09, J075047P09, J075063C18, J075076E07, J075077F14, J075086C22, J075161L09, J075177K20, J090007L06, J090010M02, J090013M20, J090044I15, J090045O06, J090060L04, J090061C17, J090062F10, J090066L03, J090089E13, J090096D21, J100039F12, J100053N06
	OsREG533	CCCAGCCCAGCCC		PPDB Motif	GCCCA		PLACE Motif
	OsREG523	CCAGCCCAGCCCA		PPDB Motif	GCCCA		PLACE Motif
	OsREG512	CAGCCCAGCCCAG		PPDB Motif	GCCCA		PLACE Motif
	OsREG464	AGCCCAGC		PPDB Motif	GCCCA		PLACE Motif
	OsREG603	GCCCAGCC		PPDB Motif	GCCCA		PLACE Motif
REG		TCCGTCCGA		+	3277315	3277323	005-010-H01, 009-156-F07, 012-025-F01, 012-089-A02, 016-016-E08, AK073392, AK099225, AK101469, AY236158, J013152M22, J023013N11, J023038J11, J023054N21, J033041E13, J033050O09, J033093G05, J033094J17, J033112J24, J033113D05, J033120K10, J033121H19, J033129C08, J033140H24, J065020I18, J065058L01, J065059G22, J065212L09, J075047P09, J075063C18, J075076E07, J075077F14, J075086C22, J075161L09, J075177K20, J090007L06, J090010M02, J090013M20, J090044I15, J090045O06, J090060L04, J090061C17, J090062F10, J090066L03, J090089E13, J090096D21, J100039F12, J100053N06
	OsREG561	TCCGTCCG		PPDB Motif			PLACE Motif
	OsREG545	CCGTCCGA		PPDB Motif			PLACE Motif