version
PlantPromoterDB promoter information of J013127E01

Summary of Gene (J013127E01)

Organism Oryza sativa  
Chromosome 11  
Locus Os11g0168200        NCBI 
Gene model J013127E01  
Description NONE  
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Overview

Focused view (chromosome 11: 3277114-3278313)

Genome position     
from initiation codon
005-010-H01         
009-156-F07         
012-025-F01         
012-089-A02         
016-016-E08         
AK073392            
AK099225            
AK101469            
AY236158            
J013052D02          
J013152M22          
J023013N11          
J023038J11          
J023054N21          
J023129O18          
J033034H24          
J033041E13          
J033050O09          
J033093G05          
J033094J17          
J033112J24          
J033113D05          
J033120K10          
J033121H19          
J033129C08          
J033133D21          
J033140H24          
J033142H24          
J065020I18          
J065058L01          
J065059G22          
J065212L09          
J075047P09          
J075063C18          
J075076E07          
J075077F14          
J075086C22          
J075161L09          
J075177K20          
J090007L06          
J090010M02          
J090013M20          
J090044I15          
J090045O06          
J090060L04          
J090061C17          
J090062F10          
J090066L03          
J090089E13          
J090096D21          
J100039F12          
J100053N06          
TSS from cDNA
TSS information
J013127E01                       5'->3' (+)
Promoter sequence









 
                    
TSS from cDNA
TSS information
                                 3'->5' (-)
Promoter sequence

 
ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of J013127E01

TSS information

TypeSequenceTPM scoreGenome positionPosition from initiation codon
   StrandPositionPosition
Not Available Not Available Not Available Not Available Not Available 

TSS information from cDNA

TypeSequenceScoreGenome positionPosition from initiation codon
   StrandPositionPosition
Not Available Not Available Not Available Not Available Not Available 

Core promoter information

TypeSequenceGenome positionPosition from initiation codon
  StrandStartEndStartEnd
initiatorNot AvailableNot AvailableNot Available
TATA BoxNoneNoneNone
Y PatchNoneNoneNone
GANoneNoneNone
InrNoneNoneNone

REG information

TypeSequenceAnnotationGenome positionPosition from initiation codon
   StrandStartEndStartEnd
REGNoneNoneNone

Other Reliable Promoter Summary

TSS information

TypeSequenceTPM scoreGenome positionGene model
   StrandPosition 
Not Available Not Available Not Available Not Available Not Available 

TSS information from cDNA

TypeSequenceScoreGenome positionGene model
   StrandPosition 
TSS cloneGclone+3277366AK073392, J065059G22, AK073392, J033041E13, J033129C08, AK101469, J023013N11, 016-016-E08, J033121H19, J033050O09, J090061C17, J033140H24, J033112J24, J023054N21, J090096D21, J090007L06, J023038J11, J065212L09, J100039F12, J090045O06, J090060L04, J100053N06, J090010M02, J090013M20, J090066L03, J033120K10, J013152M22, J033093G05, J090044I15, J090089E13, J090062F10, J075047P09, J075063C18, J075076E07, J075077F14, J075086C22, J075161L09, J075177K20, 009-156-F07, 012-089-A02, 012-025-F01, J033113D05, AK099225, J065020I18, J065058L01, J033094J17, 005-010-H01, AY236158
TSS clone peakGclone+3277383AK073392, J065059G22, AK073392, J033041E13, J033129C08, AK101469, J023013N11, 016-016-E08, J033121H19, J033050O09, J090061C17, J033140H24, J033112J24, J023054N21, J090096D21, J090007L06, J023038J11, J065212L09, J100039F12, J090045O06, J090060L04, J100053N06, J090010M02, J090013M20, J090066L03, J033120K10, J013152M22, J033093G05, J090044I15, J090089E13, J090062F10, J075047P09, J075063C18, J075076E07, J075077F14, J075086C22, J075161L09, J075177K20, 009-156-F07, 012-089-A02, 012-025-F01, J033113D05, AK099225, J065020I18, J065058L01, J033094J17, 005-010-H01, AY236158
TSS cloneAclone+3277405AK073392, J065059G22, AK073392, J033041E13, J033129C08, AK101469, J023013N11, 016-016-E08, J033121H19, J033050O09, J090061C17, J033140H24, J033112J24, J023054N21, J090096D21, J090007L06, J023038J11, J065212L09, J100039F12, J090045O06, J090060L04, J100053N06, J090010M02, J090013M20, J090066L03, J033120K10, J013152M22, J033093G05, J090044I15, J090089E13, J090062F10, J075047P09, J075063C18, J075076E07, J075077F14, J075086C22, J075161L09, J075177K20, 009-156-F07, 012-089-A02, 012-025-F01, J033113D05, AK099225, J065020I18, J065058L01, J033094J17, 005-010-H01, AY236158

Core promoter information

TypeSequenceGenome positionGene model
  StrandStartEnd 
initiatorNot AvailableNot AvailableNot Available
TATA BoxCCTTTATAAGCG+32773523277363005-010-H01, 009-156-F07, 012-025-F01, 012-089-A02, 016-016-E08, AK073392, AK099225, AK101469, AY236158, J013152M22, J023013N11, J023038J11, J023054N21, J033041E13, J033050O09, J033093G05, J033094J17, J033112J24, J033113D05, J033120K10, J033121H19, J033129C08, J033140H24, J065020I18, J065058L01, J065059G22, J065212L09, J075047P09, J075063C18, J075076E07, J075077F14, J075086C22, J075161L09, J075177K20, J090007L06, J090010M02, J090013M20, J090044I15, J090045O06, J090060L04, J090061C17, J090062F10, J090066L03, J090089E13, J090096D21, J100039F12, J100053N06
Y PatchNoneNoneNone
GANoneNoneNone
InrNoneNoneNone

REG information

TypeSequenceAnnotationGenome positionGene model
   StrandStartEnd 
REGTTGTGGGCCAGAGCCCATCC+32772343277253005-010-H01, 009-156-F07, 012-025-F01, 012-089-A02, 016-016-E08, AK073392, AK099225, AK101469, AY236158, J013152M22, J023013N11, J023038J11, J023054N21, J033041E13, J033050O09, J033093G05, J033094J17, J033112J24, J033113D05, J033120K10, J033121H19, J033129C08, J033140H24, J065020I18, J065058L01, J065059G22, J065212L09, J075047P09, J075063C18, J075076E07, J075077F14, J075086C22, J075161L09, J075177K20, J090007L06, J090010M02, J090013M20, J090044I15, J090045O06, J090060L04, J090061C17, J090062F10, J090066L03, J090089E13, J090096D21, J100039F12, J100053N06
 OsREG597TTGTGGGC             PPDB MotifGCCCA  PLACE Motif 
 OsREG627 TGTGGGCC            PPDB MotifGCCCA  PLACE Motif 
 OsREG654  GTGGGCCA           PPDB MotifGCCCA  PLACE Motif 
 OsREG577   TGGGCCAG          PPDB MotifGCCCA  PLACE Motif 
 OsREG638    GGGCCAGA         PPDB MotifGCCCA  PLACE Motif 
 OsREG466           AGCCCATC  PPDB MotifGCCCA  PLACE Motif 
 OsREG608            GCCCATCC PPDB MotifGCCCA  PLACE Motif 
REGCCCAGCCCAGCCCAG+32772573277271005-010-H01, 009-156-F07, 012-025-F01, 012-089-A02, 016-016-E08, AK073392, AK099225, AK101469, AY236158, J013152M22, J023013N11, J023038J11, J023054N21, J033041E13, J033050O09, J033093G05, J033094J17, J033112J24, J033113D05, J033120K10, J033121H19, J033129C08, J033140H24, J065020I18, J065058L01, J065059G22, J065212L09, J075047P09, J075063C18, J075076E07, J075077F14, J075086C22, J075161L09, J075177K20, J090007L06, J090010M02, J090013M20, J090044I15, J090045O06, J090060L04, J090061C17, J090062F10, J090066L03, J090089E13, J090096D21, J100039F12, J100053N06
 OsREG533CCCAGCCCAGCCC   PPDB MotifGCCCA  PLACE Motif 
 OsREG523 CCAGCCCAGCCCA  PPDB MotifGCCCA  PLACE Motif 
 OsREG512  CAGCCCAGCCCAG PPDB MotifGCCCA  PLACE Motif 
 OsREG464   AGCCCAGC     PPDB MotifGCCCA  PLACE Motif 
 OsREG603    GCCCAGCC    PPDB MotifGCCCA  PLACE Motif 
REGTCCGTCCGA+32773153277323005-010-H01, 009-156-F07, 012-025-F01, 012-089-A02, 016-016-E08, AK073392, AK099225, AK101469, AY236158, J013152M22, J023013N11, J023038J11, J023054N21, J033041E13, J033050O09, J033093G05, J033094J17, J033112J24, J033113D05, J033120K10, J033121H19, J033129C08, J033140H24, J065020I18, J065058L01, J065059G22, J065212L09, J075047P09, J075063C18, J075076E07, J075077F14, J075086C22, J075161L09, J075177K20, J090007L06, J090010M02, J090013M20, J090044I15, J090045O06, J090060L04, J090061C17, J090062F10, J090066L03, J090089E13, J090096D21, J100039F12, J100053N06
 OsREG561TCCGTCCG  PPDB Motif  PLACE Motif 
 OsREG545 CCGTCCGA PPDB Motif  PLACE Motif 


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