Summary of Gene (J023007G05)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon AK070780 AK072458 AK103563 AY054407 J013058P06 J013093G04 J013096B07 J023024N12 J023036C22 J023063J20 J023068N13 J023091A08 J023099I01 J023105J21 J023121E21 J023126C21 J023133G11 J023136K23 J023138D20 J033022N20 J033065N15 J033109L23 J053042L13 J053048F16 J053073C08 J065135E24 J065210M08 J075080H01 J075082K02 J075094J24 J075106P21 J075142H01 J090007P14 J100078A03 J100085B02 TSS from cDNA TSS information J023007G05 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | - | 20781057 | -177 |
TSS clone peak | A | clone | - | 20780978 | -98 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CTCCTCTC | - | 20780970 | 20780977 | -90 | -97 |
Y Patch | TTCTCCTCC | - | 20780979 | 20780987 | -99 | -107 |
Y Patch | CCTTCCTCTCTCCTCTCCTCTT | - | 20781008 | 20781029 | -128 | -149 |
Y Patch | TCTCTCTCTC | - | 20781058 | 20781067 | -178 | -187 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | ACCCCCCA | - | 20781068 | 20781075 | -188 | -195 | |||
OsREG438 | ACCCCCCA | PPDB Motif |   | PLACE Motif |   | ||||
REG | AGGTGGGCCCCACGGCCCG | - | 20781118 | 20781136 | -238 | -256 | |||
OsREG476 | AGGTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG628 | GGTGGGCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG640 | GTGGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG647 | TGGGCCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG641 | GGGCCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG631 | GGCCCCAC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG572 | GCCCCACG | PPDB Motif |   | PLACE Motif |   | ||||
OsREG521 | CCACGGCC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG504 | CACGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG446 | ACGGCCCG | PPDB Motif | ACGGGC  | PLACE Motif |   | ||||
REG | CCCGGGCCCACCAGCCCAG | - | 20781140 | 20781158 | -260 | -278 | |||
OsREG539 | CCCGGGCC | PPDB Motif |   | PLACE Motif |   | ||||
OsREG543 | CCGGGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG566 | CGGGCCCA | PPDB Motif | GCCCA, ACGGGC  | PLACE Motif |   | ||||
OsREG640 | GGGCCCAC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG628 | GGCCCACC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG599 | GCCCACCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG523 | CCAGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG512 | CAGCCCAG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GGACGGCT | - | 20781202 | 20781209 | -322 | -329 | |||
OsREG468 | GGACGGCT | PPDB Motif |   | PLACE Motif |   | ||||
REG | CCCATCCA | - | 20781229 | 20781236 | -349 | -356 | |||
OsREG534 | CCCATCCA | PPDB Motif | GCCCA  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |