PlantPromoterDB promoter information of J023008G04
Summary of Gene (J023008G04)
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Overview
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Focused view (chromosome 1: 41947798-41946599)
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Genome position
from initiation codon AK073965 J013023K02 J033072A13 J033106F08 J043009F23 J043027F03 J065009O17 J065046M03 J065051H14 J065077G12 J065082M20 J065087O20 J065123N10 J065124O16 J065163P15 J065166D19 J065212C15 J065219F23 J075068F08 J075139J12 J075196K05 J090050D18 J090099H08 J100029L12 J100044C19 J100056L03 J100078E23 J100087E19 TSS from cDNA TSS information J023008G04 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Promoter Summary of J023008G04
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | C | clone | - | 41946728 | -180 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TATAAAGG | - | 41946754 | 41946761 | -206 | -213 |
| Y Patch | TCCTCCTCTCCTTCCCCTC | - | 41946705 | 41946723 | -157 | -175 |
| Y Patch | TCCTCCTCTCTCTCCC | - | 41946733 | 41946748 | -185 | -200 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AATTGGGCCTA | - | 41946990 | 41947000 | -442 | -452 | |||
| OsREG433 | AATTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG492 | ATTGGGCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG471 | TTGGGCCT | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG656 | TGGGCCTA | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||