PlantPromoterDB promoter information of J023008G04
Summary of Gene (J023008G04)
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Overview
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Focused view (chromosome 1: 41948348-41947149)
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Genome position
from initiation codon TSS from cDNA TSS information J023008G04 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence |
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Promoter Summary of J023008G04
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | C | clone | - | 41946728 | -180 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TATAAAGG | - | 41946754 | 41946761 | -206 | -213 |
| Y Patch | TCCTCCTCTCCTTCCCCTC | - | 41946705 | 41946723 | -157 | -175 |
| Y Patch | TCCTCCTCTCTCTCCC | - | 41946733 | 41946748 | -185 | -200 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AATTGGGCCTA | - | 41946990 | 41947000 | -442 | -452 | |||
| OsREG433 | AATTGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG492 | ATTGGGCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG471 | TTGGGCCT | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG656 | TGGGCCTA | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||