PlantPromoterDB promoter information of J023029F18
Summary of Gene (J023029F18)
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Overview
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Focused view (chromosome 9: 23763104-23764303)
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Genome position
from initiation codon TSS from cDNA TSS information J023029F18 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of J023029F18
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | G | clone | + | 23765697 | -257 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AGTGGGCCGTGG | + | 23765558 | 23765569 | -396 | -385 | |||
| OsREG478 | AGTGGGCC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG564 | GTGGGCCG | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG445 | TGGGCCGT | PPDB Motif | GCCCA | PLACE Motif | AACAAAC | ||||
| OsREG504 | GGGCCGTG | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG521 | GGCCGTGG | PPDB Motif | PLACE Motif | ||||||
| REG | TATGGGCTTGG | + | 23765587 | 23765597 | -367 | -357 | |||
| OsREG465 | TATGGGCT | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG429 | ATGGGCTT | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG496 | TGGGCTTG | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG519 | GGGCTTGG | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||