PlantPromoterDB promoter information of J023056L18
Summary of Gene (J023056L18)
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Overview
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Focused view (chromosome 8: 27647446-27648645)
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Genome position
from initiation codon J023007A22 J023030P18 J023090P11 J023104P10 J023115M06 TSS from cDNA TSS information J023056L18 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
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Promoter Summary of J023056L18
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | G | clone | + | 27648636 | -60 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCCTTCCT | + | 27648676 | 27648683 | -20 | -13 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CCTGTCAGT | + | 27648446 | 27648454 | -250 | -242 | |||
| OsREG551 | CCTGTCAG | PPDB Motif | PLACE Motif | TGAC | |||||
| OsREG453 | CTGTCAGT | PPDB Motif | PLACE Motif | TGAC | |||||
| REG | CGCGTGCG | + | 27648505 | 27648512 | -191 | -184 | |||
| OsREG555 | CGCGTGCG | PPDB Motif | PLACE Motif | ||||||
| REG | CGGACGGA | + | 27648547 | 27648554 | -149 | -142 | |||
| OsREG561 | CGGACGGA | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | AGGGCCCACACG | - | 27647440 | 27647451 | 004-006-D12, 006-085-H05, 006-101-B02, AK070842, AK104490, J013095F24, J013111D10, J023031C15, J023067J02, J023074O14, J033058F18, J033101F12, J053026B20, J065070G12, J065196H18, J075021N20, J075069K22, J075093E22, J075110D17, J075119D06, J075181H15, J090038O15, J090043K23, J090082E12, J100022M19, J100027E06, J100028G17, J100061I16, J100065G23, J100087C13 | ||||
| OsREG475 | AGGGCCCA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG640 | GGGCCCAC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG627 | GGCCCACA | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG598 | GCCCACAC | PPDB Motif | GCCCA | PLACE Motif | |||||
| OsREG526 | CCCACACG | PPDB Motif | GCCCA | PLACE Motif | |||||