Summary of Gene (J023056L18)
|
Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon J023007A22 J023030P18 J023090P11 J023104P10 J023115M06 TSS from cDNA TSS information J023056L18 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence |
|
![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | G | clone | + | 27648636 | -60 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCCTTCCT | + | 27648676 | 27648683 | -20 | -13 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CCTGTCAGT | + | 27648446 | 27648454 | -250 | -242 | |||
OsREG551 | CCTGTCAG | PPDB Motif |   | PLACE Motif | TGAC  | ||||
OsREG453 | CTGTCAGT | PPDB Motif |   | PLACE Motif | TGAC  | ||||
REG | CGCGTGCG | + | 27648505 | 27648512 | -191 | -184 | |||
OsREG555 | CGCGTGCG | PPDB Motif |   | PLACE Motif |   | ||||
REG | CGGACGGA | + | 27648547 | 27648554 | -149 | -142 | |||
OsREG561 | CGGACGGA | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | AGGGCCCACACG | - | 27647440 | 27647451 | 004-006-D12, 006-085-H05, 006-101-B02, AK070842, AK104490, J013095F24, J013111D10, J023031C15, J023067J02, J023074O14, J033058F18, J033101F12, J053026B20, J065070G12, J065196H18, J075021N20, J075069K22, J075093E22, J075110D17, J075119D06, J075181H15, J090038O15, J090043K23, J090082E12, J100022M19, J100027E06, J100028G17, J100061I16, J100065G23, J100087C13 | ||||
OsREG475 | AGGGCCCA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG640 | GGGCCCAC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG627 | GGCCCACA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG598 | GCCCACAC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
OsREG526 | CCCACACG | PPDB Motif | GCCCA  | PLACE Motif |   |